@article{vseva2019vist,
  title={VIST-a Variant-Information Search Tool for precision oncology},
  author={{\v{S}}eva, Jurica and Wiegandt, David Luis and G{\"o}tze, Julian and Lamping, Mario and Rieke, Damian and Sch{\"a}fer, Reinhold and J{\"a}hnichen, Patrick and Kittner, Madeleine and Pallarz, Steffen and Starlinger, Johannes and others},
  journal={BMC bioinformatics},
  volume={20},
  number={1},
  pages={429},
  year={2019},
  publisher={Springer},
  doi={10.1186/s12859-019-2958-3}
}

@article{miller2017automated,
  title={Automated identification of drug-drug interactions in pediatric congestive heart failure patients},
  author={Miller, Daniel},
  journal={arXiv preprint arXiv:1702.04615},
  url={https://arxiv.org/abs/1702.04615},
  year={2017}
}

@article{shahri2019propheno,
  title={ProPheno 1.0: An Online Dataset for Accelerating the Complete Characterization of the Human Protein-phenotype Landscape in Biomedical Literature},
  author={Shahri, Morteza Pourreza and Kahanda, Indika},
  year={2019},
  doi={10.7287/peerj.preprints.27479v2}
}

@inproceedings{galea2018sub,
  title={Sub-word information in pre-trained biomedical word representations: evaluation and hyper-parameter optimization},
  author={Galea, Dieter and Laponogov, Ivan and Veselkov, Kirill},
  booktitle={Proceedings of the BioNLP 2018 workshop},
  pages={56--66},
  year={2018},
  doi={10.18653/v1/w18-2307}
}

@article{abdeddaim2019mesh,
  title={The MeSH-Gram Neural Network Model: Extending Word Embedding Vectors with MeSH Concepts for Semantic Similarity.},
  author={Abdeddaim, Sa{\"\i}d and Vimard, Sylvestre and Soualmia, Lina F},
  journal={Studies in health technology and informatics},
  volume={264},
  pages={5--9},
  year={2019},
  doi={10.3233/shti190172}
}

@article{achakulvisut2019claim,
  title={Claim Extraction in Biomedical Publications using Deep Discourse Model and Transfer Learning},
  author={Achakulvisut, Titipat and Bhagavatula, Chandra and Acuna, Daniel and Kording, Konrad},
  journal={arXiv preprint arXiv:1907.00962},
  url={https://arxiv.org/abs/1907.00962},  
  year={2019}
}

@article{rakhi2018data,
  title={Data-driven analysis of biomedical literature suggests broad-spectrum benefits of culinary herbs and spices},
  author={Rakhi, NK and Tuwani, Rudraksh and Mukherjee, Jagriti and Bagler, Ganesh},
  journal={PloS one},
  volume={13},
  number={5},
  pages={e0198030},
  year={2018},
  publisher={Public Library of Science},
  doi={10.1371/journal.pone.0198030}
}

@article{nikolov2018data,
  title={Data-driven summarization of scientific articles},
  author={Nikolov, Nikola I and Pfeiffer, Michael and Hahnloser, Richard HR},
  journal={arXiv preprint arXiv:1804.08875},
  url={https://arxiv.org/abs/1804.08875},    
  year={2018}
}

@inproceedings{mesbah2018smartpub,
  title={{SmartPub}: a platform for long-tail entity extraction from scientific publications},
  author={Mesbah, Sepideh and Bozzon, Alessandro and Lofi, Christoph and Houben, Geert-Jan},
  booktitle={Companion Proceedings of the {The Web Conference} 2018},
  pages={191--194},
  year={2018}
}

@inproceedings{tang2019parallel,
  title={Parallel Computing for Large-Scale Author Name Disambiguation in {MEDLINE}},
  author={Tang, Anyao and Wu, Chengkun and Liu, Jie and Wang, Wei and Yang, Xi and Xing, Yuting},
  booktitle={2019 {IEEE} 21st {International Conference on High Performance Computing and Communications}; {IEEE} 17th {International Conference on Smart City}; {IEEE} 5th {International Conference on Data Science and Systems (HPCC/SmartCity/DSS)}},
  pages={1580--1586},
  year={2019},
  organization={IEEE},
  doi={10.1109/hpcc/smartcity/dss.2019.00217}
}

@article{abdeddaim2018mesh,
  title={The {MeSH-gram Neural Network Model}: Extending Word Embedding Vectors with {MeSH} Concepts for {UMLS} Semantic Similarity and Relatedness in the Biomedical Domain},
  author={Abdedda{\"\i}m, Sa{\"\i}d and Vimard, Sylvestre and Soualmia, Lina Fatima},
  journal={arXiv preprint arXiv:1812.02309},
  url={https://arxiv.org/abs/1812.02309},      
  year={2018}
}
